Sepanjang operasional, Malindo Air telah memenangkan Airline Passenger Experience Association (APEX) 2019 dan “The Exquisite Pic Award” oleh Best International Flight Ad of “The Exquisite Pic Award” by Thomas Edison Advertisement (TEA) Awards.

Malindo Air memperoleh Airline Passenger Experience Association (APEX) 2018 Four Star Major Regional Airline Recognition dan Malaysia Best Employer Brand Awards 2018, CAPA’s 2016 Asia Pacific Regional Airline of the Year, New Comer of the Year, Australia 2016/17 by Expedia.com., TOP Recognition - Malaysia SME® Preferred Airline Partner, Airline of the Year (Passenger) at the KLIA Awards 2014 and Top Performing Airline 2015 by Travelport.